{
    "@context": [
        "https://w3id.org/ro/crate/1.3/context",
        "https://esciencelab.org.uk/bge-ro-crate-profile/0.2-DRAFT/context.json"
    ],
    "@graph": [
        {
            "@id": "./",
            "@type": "Dataset",
            "about": [
                {
                    "@id": "https://bench.boldsystems.org/index.php/TaxBrowser_TaxonPage?taxid=66969"
                }
            ],
            "conformsTo": [
                {
                    "@id": "https://esciencelab.org.uk/bge-ro-crate-profile/0.2-DRAFT/bge-profile"
                }
            ],
            "datePublished": "2026-10-13T15:43:21+00:00",
            "description": "Barcode of Carystina auriferDHJ01",
            "hasPart": [
                {
                    "@id": "#07-SRNP-32653"
                },
                {
                    "@id": "#MHMXN361-07-sequencing"
                },
                {
                    "@id": "#MHMXN361-07.COI-5P"
                }
            ],
            "identifier": [
                "TODO project identifiers for barcoding"
            ],
            "license": {
                "@id": "https://spdx.org/licenses/CC0-1.0"
            },
            "mainEntity": [
                {
                    "@id": "#MHMXN361-07.COI-5P"
                }
            ],
            "name": "Barcode of Carystina auriferDHJ01",
            "scientificName": [
                {
                    "@id": "https://bench.boldsystems.org/index.php/TaxBrowser_TaxonPage?taxid=66969"
                }
            ],
            "taxonomicRange": [
                {
                    "@id": "https://bench.boldsystems.org/index.php/TaxBrowser_TaxonPage?taxid=66969"
                }
            ]
        },
        {
            "@id": "ro-crate-metadata.json",
            "@type": "CreativeWork",
            "about": {
                "@id": "./"
            },
            "conformsTo": {
                "@id": "https://w3id.org/ro/crate/1.3"
            }
        },
        {
            "@id": "https://spdx.org/licenses/CC0-1.0",
            "@type": "CreativeWork",
            "name": "Creative Commons Zero v1.0 Universal",
            "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode"
        },
        {
            "@id": "https://bench.boldsystems.org/index.php/TaxBrowser_TaxonPage?taxid=66969",
            "@type": "Taxon",
            "name": "Carystina auriferDHJ01",
            "scientificName": "Carystina auriferDHJ01",
            "taxonRank": [
                "https://bench.boldsystems.org/index.php/TaxBrowser_TaxonPage?taxid=66969"
            ]
        },
        {
            "@id": "https://ror.org/0566bfb96",
            "@type": "Organization",
            "location": {
                "@id": "https://www.geonames.org/2751773"
            },
            "name": "Naturalis Biodiversity Center",
            "url": "https://www.naturalis.nl"
        },
        {
            "@id": "https://www.geonames.org/2751773",
            "@type": "Place",
            "name": "Leiden, NL"
        },
        {
            "@id": "https://ror.org/039zvsn29",
            "@type": "Organization",
            "location": {
                "@id": "https://www.geonames.org/2643743"
            },
            "name": "Natural History Museum",
            "url": "https://www.nhm.ac.uk"
        },
        {
            "@id": "https://www.geonames.org/2643743",
            "@type": "Place",
            "name": "London, UK"
        },
        {
            "@id": "#07-SRNP-32653",
            "@type": "BioSample",
            "collectionMethod": null,
            "collector": "Calixto Moraga",
            "conformsTo": {
                "@id": "https://bioschemas.org/profiles/Sample/0.2-RELEASE-2018_11_10"
            },
            "contributor": "Daniel H. Janzen",
            "custodian": "TODO custodian",
            "dateCollected": "2007-08-02",
            "description": "BOLD record for biosample accession 07-SRNP-32653.",
            "ethics": null,
            "identifier": [
                "07-SRNP-32653"
            ],
            "locationOfOrigin": "[10.989, -85.423]",
            "name": "Sample 07-SRNP-32653"
        },
        {
            "@id": "#sequencing-protocol-fa9bda73-a7e2-48b2-a9e6-89e2f4494246",
            "@type": "LabProtocol",
            "description": "Sequencing protocol [placeholder]",
            "name": "Sequencing protocol"
        },
        {
            "@id": "#MHMXN361-07-sequencing",
            "@type": "Dataset",
            "description": "Sequencing stage for MHMXN361-07. Contains sequenced data and a description of the process used to create it.",
            "hasPart": [
                {
                    "@id": "ftp://placeholder-data-download-link"
                }
            ],
            "mentions": [
                {
                    "@id": "#sequencing-process-5b6784e7-81ee-4ad2-9f36-ec6fd906abdb"
                }
            ],
            "name": "Sequencing stage MHMXN361-07"
        },
        {
            "@id": "ftp://placeholder-data-download-link",
            "@type": "File",
            "contentSize": 0,
            "description": "example: PacBio sequencing of sample 07-SRNP-32653, performed as part of process MHMXN361-07 for study accession XYZ.",
            "encodingFormat": "TODO",
            "name": "Sequencing data for MHMXN361-07",
            "sdDatePublished": "2026-10-13 16:43:23.440729"
        },
        {
            "@id": "#sequencing-process-5b6784e7-81ee-4ad2-9f36-ec6fd906abdb",
            "@type": "LabProcess",
            "agent": "TODO wet lab contributors",
            "endDate": "2009-01-05",
            "executesLabProtocol": {
                "@id": "#sequencing-protocol-fa9bda73-a7e2-48b2-a9e6-89e2f4494246"
            },
            "instrument": {
                "@id": "#sequencing-protocol-fa9bda73-a7e2-48b2-a9e6-89e2f4494246"
            },
            "name": "Genome sequencing process (MHMXN361-07)",
            "object": {
                "@id": "#07-SRNP-32653"
            },
            "provider": "Centre for Biodiversity Genomics",
            "result": [
                {
                    "@id": "ftp://placeholder-data-download-link"
                }
            ]
        },
        {
            "@id": "%23assembly-workflow-6916243b-4442-42b9-9174-edaebb4dd3a1",
            "@type": [
                "File",
                "SoftwareSourceCode",
                "ComputationalWorkflow"
            ],
            "description": "A placeholder for a workflow that could exist on WorkflowHub (etc) or be directly contained within the crate",
            "name": "Assembly workflow (placeholder)",
            "programmingLanguage": {
                "@id": "https://w3id.org/workflowhub/workflow-ro-crate#cwl"
            },
            "sdDatePublished": "2026-10-13 16:43:23.440874"
        },
        {
            "@id": "https://w3id.org/workflowhub/workflow-ro-crate#cwl",
            "@type": "ComputerLanguage",
            "alternateName": "CWL",
            "identifier": {
                "@id": "https://w3id.org/cwl/v1.2.0/"
            },
            "name": "Common Workflow Language",
            "url": {
                "@id": "https://www.commonwl.org/"
            },
            "version": "1.2.0"
        },
        {
            "@id": "https://identifiers.org/ena.embl:JF761761",
            "@type": "BioChemEntity",
            "hasRepresentation": "--------------------------------------TAGGAACATCATTAAGATTATTAATCCGAACAGAATTAGGAAACCCAGGATCTTTAATTGGAGATGATCAAATTTACAATACTATCGTTACTGCTCATGCTTTTATTATAATTTTTTTTATAGTAATACCTATTATAATTGGAGGATTTGGAAATTGATTAATTCCCTTAATATTAGGGGCTCCCGACATAGCTTTCCCCCGAATAAACAACATAAGATTTTGAATATTACCCCCATCTTTAACTCTTTTAATTTCAAGAAGAATTGTAGAAAATGGTGCCGGAACAGGTTGAACTGTTTACCCCCCCCTTTCATCTAATATTGCCCATCAAGGATCTTCGGTCGATTTAGCAATTTTTTCCTTACATTTAGCTGGTATTTCTTCAATCTTAGGGGCTATCAATTTTATTACTACAATTATTAATATACGAATTAAAAACTTATCATTTGATCAAATACCTTTATTTATTTGATCTGTAGGAATTACAGCACTATTATTACTCTTATCTTTACCCGTATTAGCTGGCGCTATTACTATACTTTTAACTGATCGAAATTTAAATACCTCTTTTTTCGACCCTGCGGGAGGGGG----------------------------",
            "name": "Barcode data from process MHMXN361-07",
            "sdDatePublished": "2026-10-13 16:43:24.372400",
            "taxonomicRange": null
        },
        {
            "@id": "#MHMXN361-07.COI-5P",
            "@type": "Dataset",
            "description": "Barcode assembly stage for MHMXN361-07.COI-5P. Contains the workflow used, the workflow execution details, and the output data.",
            "hasPart": [
                {
                    "@id": "https://identifiers.org/ena.embl:JF761761"
                },
                {
                    "@id": "%23assembly-workflow-6916243b-4442-42b9-9174-edaebb4dd3a1"
                }
            ],
            "mentions": [
                {
                    "@id": "#MHMXN361-07-assembly"
                }
            ],
            "name": "Barcode assembly MHMXN361-07.COI-5P",
            "sdDatePublished": "2026-10-13 16:43:24.372516"
        },
        {
            "@id": "#MHMXN361-07-assembly",
            "@type": "CreateAction",
            "agent": "TODO assembly contributors",
            "instrument": {
                "@id": "%23assembly-workflow-6916243b-4442-42b9-9174-edaebb4dd3a1"
            },
            "name": "Barcode assembly process (MHMXN361-07)",
            "object": [
                {
                    "@id": "ftp://placeholder-data-download-link"
                }
            ],
            "result": [
                {
                    "@id": "https://identifiers.org/ena.embl:JF761761"
                }
            ]
        },
        {
            "@id": "https://github.com/naturalis/barcode_validator",
            "@type": "Thing",
            "description": "A Python-based toolkit for validating DNA barcode sequences through structural and taxonomic validation.",
            "name": "DNA Barcode Validator",
            "version": "TODO"
        },
        {
            "@id": "https://esciencelab.org.uk/bge-ro-crate-profile/0.2-DRAFT/bge-profile",
            "@type": [
                "CreativeWork",
                "Profile"
            ],
            "name": "Biodiversity Genomics RO-Crate Profile",
            "version": "0.2-DRAFT"
        }
    ]
}