Genome of Culex laticinctus

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Genome of Culex laticinctus



Go to: Culex laticinctus



Go to: Sample SAMEA114402090

@id https://identifiers.org/ena.embl:SAMEA114402090
name [?] Sample SAMEA114402090
@type BioSample
description [?] ENA record for biosample accession SAMEA114402090.
collector Sonia Cebrian Camison
conformsTo [?] https://bioschemas.org/profiles/Sample/0.2-RELEASE-2018_11_10
contributor [?] Sonia Cebrian Camison
custodian TODO custodian
ethics https://www.boe.es/eli/es-an/l/2003/10/28/8
identifier [?]
locationOfOrigin 37.315096 N 6.168537 W
sameAs [?] Sample SAMEA114402071
Items that reference this one
hasPart [?]
object [?]


Go to: Sample SAMEA114402091

@id https://identifiers.org/ena.embl:SAMEA114402091
name [?] Sample SAMEA114402091
@type BioSample
description [?] ENA record for biosample accession SAMEA114402091.
collector Sonia Cebrian Camison
conformsTo [?] https://bioschemas.org/profiles/Sample/0.2-RELEASE-2018_11_10
contributor [?] Sonia Cebrian Camison
custodian TODO custodian
ethics https://www.boe.es/eli/es-an/l/2003/10/28/8
identifier [?]
locationOfOrigin 37.315096 N 6.168537 W
sameAs [?] https://identifiers.org/ena.embl:SAMEA114402072
Items that reference this one
hasPart [?]
object [?] DNA/RNA extraction process (ERX12433627)


Go to: Sample SAMEA114402094

@id https://identifiers.org/ena.embl:SAMEA114402094
name [?] Sample SAMEA114402094
@type BioSample
description [?] ENA record for biosample accession SAMEA114402094.
collector Sonia Cebrian Camison
conformsTo [?] https://bioschemas.org/profiles/Sample/0.2-RELEASE-2018_11_10
contributor [?] Sonia Cebrian Camison
custodian TODO custodian
ethics https://www.boe.es/eli/es-an/l/2003/10/28/8
identifier [?]
locationOfOrigin 37.315096 N 6.168537 W
sameAs [?] https://identifiers.org/ena.embl:SAMEA114402075
Items that reference this one
hasPart [?]
object [?] DNA/RNA extraction process (ERX12519568)


Go to: Sample SAMEA114402071

@id https://identifiers.org/ena.embl:SAMEA114402071
name [?] Sample SAMEA114402071
@type BioSample
description [?] ENA record for biosample accession SAMEA114402071.
collector Sonia Cebrian Camison
conformsTo [?] https://bioschemas.org/profiles/Sample/0.2-RELEASE-2018_11_10
contributor [?] Sonia Cebrian Camison
custodian TODO custodian
ethics https://www.boe.es/eli/es-an/l/2003/10/28/8
identifier [?]
locationOfOrigin 37.315096 N 6.168537 W
Items that reference this one
hasPart [?]
sameAs [?] Sample SAMEA114402090


Go to: Sequencing stage ERX12519568



Go to: Sequencing stage ERX12433627



Go to: Sequencing stage ERX12405204



Go to: Sequencing stage ERX12405205



Go to: idCulLati1.1 assembly for Culex laticinctus

@id https://www.ebi.ac.uk/ena/browser/view/GCA_964187845.1/
name [?] idCulLati1.1 assembly for Culex laticinctus
@type Dataset
description [?] The assembly idCulLati1.1 is based on 51x PacBio data and Arima2 Hi-C data generated as part of the European Reference Genome Atlas (ERGA, https://www.erga-biodiversity.eu/) via the Biodiversity Genomics Europe project (BGE, https://biodiversitygenomics.eu/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. A manually phased assembly (based on HiC signal) was generated from a jointly curated primary and alt assembly. Finally, the primary assembly was analysed and manually improved using TreeVal. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.
hasPart [?]
mentions [?] Genome assembly process (GCA_964187845.1)
sdDatePublished [?] 2025-08-15T12:51:07+00:00
Items that reference this one
hasPart [?]
result [?] Genome assembly process (GCA_964187845.1)


Go to: idCulLati1.1 alternate haplotype assembly for Culex laticinctus

@id https://www.ebi.ac.uk/ena/browser/view/GCA_964187835.1/
name [?] idCulLati1.1 alternate haplotype assembly for Culex laticinctus
@type Dataset
description [?] The assembly idCulLati1.1 is based on 51x PacBio data and Arima2 Hi-C data generated as part of the European Reference Genome Atlas (ERGA, https://www.erga-biodiversity.eu/) via the Biodiversity Genomics Europe project (BGE, https://biodiversitygenomics.eu/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. A manually phased assembly (based on HiC signal) was generated from a jointly curated primary and alt assembly. Finally, the primary assembly was analysed and manually improved using TreeVal.
hasPart [?]
mentions [?] Genome assembly process (GCA_964187835.1)
sdDatePublished [?] 2025-08-15T12:51:07+00:00
Items that reference this one
hasPart [?]
result [?] Genome assembly process (GCA_964187835.1)


DNA/RNA extraction process (ERX12519568)

@id #wet-lab-process-6c585144-62e6-47ee-93a3-13bd873c602d
name [?] DNA/RNA extraction process (ERX12519568)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sanger Tree of Life Wet Laboratory Protocol Collection V.1
instrument [?] Sanger Tree of Life Wet Laboratory Protocol Collection V.1
location [?] Cambridge, UK
object [?] Sample SAMEA114402094
provider [?] Wellcome Sanger Institute
result [?] Processed DNA/RNA (ERX12519568)
Items that reference this one
mentions [?]


Genome sequencing process (ERX12519568)

@id #sequencing-process-f8ac7e4d-2901-4112-ba0a-35db7678f077
name [?] Genome sequencing process (ERX12519568)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sequencing protocol
instrument [?] Sequencing protocol
location [?] Cambridge, UK
object [?] Processed DNA/RNA (ERX12519568)
provider [?] Wellcome Sanger Institute
result [?]
Items that reference this one
mentions [?]


DNA/RNA extraction process (ERX12433627)

@id #wet-lab-process-b1011905-bc14-40e4-85b3-359e53186a50
name [?] DNA/RNA extraction process (ERX12433627)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sanger Tree of Life Wet Laboratory Protocol Collection V.1
instrument [?] Sanger Tree of Life Wet Laboratory Protocol Collection V.1
location [?] Cambridge, UK
object [?] Sample SAMEA114402091
provider [?] Wellcome Sanger Institute
result [?] Processed DNA/RNA (ERX12433627)
Items that reference this one
mentions [?]


Genome sequencing process (ERX12433627)

@id #sequencing-process-b49edbbc-2ca0-4009-b08e-ca7588d48bf9
name [?] Genome sequencing process (ERX12433627)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sequencing protocol
instrument [?] Sequencing protocol
location [?] Cambridge, UK
object [?] Processed DNA/RNA (ERX12433627)
provider [?] Wellcome Sanger Institute
result [?]
Items that reference this one
mentions [?]


DNA/RNA extraction process (ERX12405204)

@id #wet-lab-process-0c567b84-139d-4f89-8e9b-885c734fb4a0
name [?] DNA/RNA extraction process (ERX12405204)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sanger Tree of Life Wet Laboratory Protocol Collection V.1
instrument [?] Sanger Tree of Life Wet Laboratory Protocol Collection V.1
location [?] Cambridge, UK
object [?] Sample SAMEA114402090
provider [?] Wellcome Sanger Institute
result [?] Processed DNA/RNA (ERX12405204)
Items that reference this one
mentions [?]


Genome sequencing process (ERX12405204)

@id #sequencing-process-fd7ec438-9871-4ae5-bb5d-3efda9075e78
name [?] Genome sequencing process (ERX12405204)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sequencing protocol
instrument [?] Sequencing protocol
location [?] Cambridge, UK
object [?] Processed DNA/RNA (ERX12405204)
provider [?] Wellcome Sanger Institute
result [?] Revio sequencing: ERR13033463.fastq.gz
Items that reference this one
mentions [?]


DNA/RNA extraction process (ERX12405205)

@id #wet-lab-process-9eb9afac-9394-4112-8cce-c02b5c6533b0
name [?] DNA/RNA extraction process (ERX12405205)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sanger Tree of Life Wet Laboratory Protocol Collection V.1
instrument [?] Sanger Tree of Life Wet Laboratory Protocol Collection V.1
location [?] Cambridge, UK
object [?] Sample SAMEA114402090
provider [?] Wellcome Sanger Institute
result [?] Processed DNA/RNA (ERX12405205)
Items that reference this one
mentions [?]


Genome sequencing process (ERX12405205)

@id #sequencing-process-8324acac-8978-4e90-bae4-38adc258434a
name [?] Genome sequencing process (ERX12405205)
@type LabProcess
agent [?] TODO wet lab contributors
executesLabProtocol Sequencing protocol
instrument [?] Sequencing protocol
location [?] Cambridge, UK
object [?] Processed DNA/RNA (ERX12405205)
provider [?] Wellcome Sanger Institute
result [?] Revio sequencing: ERR13033464.fastq.gz
Items that reference this one
mentions [?]


Genome assembly process (GCA_964187845.1)

@id #assembly-process-32ac0adf-7000-44a8-a691-fa5000fc35bf
name [?] Genome assembly process (GCA_964187845.1)
@type CreateAction
agent [?] TODO assembly contributors
instrument [?] Assembly workflow (placeholder)
object [?]
result [?] idCulLati1.1 assembly for Culex laticinctus
Items that reference this one
mentions [?]


Genome assembly process (GCA_964187835.1)

@id #assembly-process-3d5ff126-8142-47c0-99d3-88be181e021b
name [?] Genome assembly process (GCA_964187835.1)
@type CreateAction
agent [?] TODO assembly contributors
instrument [?] Assembly workflow (placeholder)
object [?]
result [?] idCulLati1.1 alternate haplotype assembly for Culex laticinctus
Items that reference this one
mentions [?]